1Table: Variable description¶
1.1Table: fluxes¶
Variable description. Variables were grouped as follows: =flux, =fraction, =pool, =modulator, =stand dimension, =temperature, =pressure, =resistance, =humidity, =function.
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| mol CO2,m s | assimi | assimilation rate | |
| g C m s | gpp | Photosynthesis | |
| g C m s | pre_indust_ref_gpp | Pre-industrial reference photosynthesis | |
| gC m day | stressed_daily | Stressed daily photosynthesis | |
| gC m day | unstressed_daily | Unstressed daily photosynthesis | |
| gC m day | gpp_week | mean of daily photosynthesis calculated for the past week | |
| g C m s | npp_long-term | Net primary production averaged over the previous 3 years | |
| g C m s | pai | Net primary wood production averaged over the previous 10 years | |
| g C m s | mai | Net primary wood production averaged over the life time of the forest | |
| g C m s | resp_maint | Maintenance respiration | |
| g C m s | resp_growth | Growth respiration | |
| gC m day | resp_maint_week | mean of daily maintenance respiration calculated for the past week | |
| m s | transpir | Amount of water that a tree transpires | |
| m s | - | Amount of water available to the tree | |
| g C.m.s | resp_hetero_litter | Total heterotrophic respiration from the litter decay | |
| g C m s | lignin__inc | Input of lignin to the litter pools, being struc, metab, wood, or snag | |
| g C m s | bm_to_litter, turnover | Litter carbon input from plant organ into litter pool | |
| gC m s | ??? | BVOC emissions from canopy layer | |
| gC grid cell year | flux_prod_l | Decomposition rate of age class in the short-lived products | |
| gC grid cell year | flux_prod_m | Decomposition rate of age class in the medium-lived products | |
| gC grid cell year | flux_prod_l | Decomposition rate of age class in the long-lived products | |
| gC grid cell year | flux_l | Annual decomposition of the short-lived products | |
| gC grid cell year | flux_m | Annual decomposition of the medium-lived products | |
| gC grid cell year | flux_l | Annual decomposition of the long-lived products |
1.2Table: climate¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| K | t2m_long-term | Mean 2-meter atmospheric temperature averaged over the past 3 years | |
| K | t2m_week | Mean 2-meter atmospheric temperature averaged over the past week | |
| K | t2m_week | Mean 2-meter atmospheric temperature averaged over the past fortnight | |
| K | t2m_month | Mean 2-meter atmospheric temperature averaged over the past month | |
| K | t2m | 2-meter atmospheric temperature at the current time step | |
| K | t_root | Soil temperature weighted by the vertical distribution of root biomass | |
| mm | precip_long-term | Precipitation sum | |
| mm | precip | Precipitation sum |
1.3Table: soil dimensions¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| m | altmax | Depth at which soil freezing starts | |
| m | root_depth_tmp | Depth to which the plants can root | |
| m | z_top | Depth of the top soil layer |
1.4Table: soil and litter mass components¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| kg m | sm | Liquid water in each layer | |
| kg m | smw | Liquid water in each layer at wilting point | |
| kg | smf | Soil moisture of each layer at field capacity | |
| days | time_hum_min | Number of days since minimum soil moisture | |
| g m | litter | Total litter pool | |
| g m | qd | Carbon from the decayed litter pools | |
| g lignin g C | lignin_ | Lignin content of litter pools, being struc, metab, wood, or snag |
1.5Table: vegetation dimensions¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| m | - | Horizontal radius of the root bole of an individual tree | |
| m | height | Plant height | |
| m | ave_tree_height | Average height of the 100 tallest trees | |
| m | - | One sided leaf area of an individual plant | |
| m | - | Sapwood area of an individual plant | |
| m | delta_height | Height increment | |
| m | dia | Diameter | |
| m | qmdia | Quadratic mean diameter | |
| m | qm_dia_up_half | Quadratic mean diameter of the 50 % tallest trees | |
| m | circ | circumference | |
| m plant | ba | Basal area | |
| m plant | delta_ba | Basal area increment | |
| m | circ | Circumference of an individual tree in circumference class | |
| m | vol | Wood volume of an tree in circumference class | |
| m | n_circ_class | Stand density in circumference class | |
| m | new_ind | Number of recruits | |
| m | Nmax | Maximum stand density given the actual quadratic mean diameter of the stand | |
| m | target_st_kill | Targeted mortality in each diameter class | |
| m | total_trees | Stand density per unit of ground area with a diameter exceeding the clear cut diameter | |
| m | values | Crown diameter along the vertical (height) axis of the spheroid | |
| m | values | Crown diameter along the horizontal axis of the spheroid | |
| m | values | Volume of an individual tree crown | |
| ) | m | values | Projected area of an individual tree crown |
| m | crown_shadow_h | Projected area of an opaque tree crown | |
| m | sbar_h | Mean path length through all canopy levels | |
| m m | lai | Leaf area index | |
| m m | lai_per_level | LAI within canopy layer | |
| m | Partial_crown_volume_h | Volume of canopy within level "i" | |
| - | lai_sum | Sum of the LAI of all levels above the current level | |
| - | laieff | Effective leaf area index |
1.6Table: vegetation mass components¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| g C plant | circ_class_biomass | Mass of an individual plant organ of circumference class | |
| g N plant | circ_class_biomass | Mass of an individual plant organ of circumference class | |
| g C m | tmp_biomass | Mass of an individual plant organ of the PFT | |
| g N m | tmp_biomass | Mass of an individual plant organ of the PFT | |
| g plant | Cl | Leaf mass of an individual plant of circumference class | |
| g m | tmp_biomass | Leaf mass of the PFT | |
| g plant | Cs | Sapwood mass of an individual plant of circumference class | |
| g m | tmp_biomass | Sapwood mass of the PFT | |
| g plant | Ch | Heartwood mass of an individual plant of circumference class | |
| g m | tmp_biomass | Heartwood mass of the PFT | |
| g plant | Cr | Root mass of an individual plant of circumference class | |
| g m | tmp_biomass | Root mass of the PFT | |
| g plant | Cr | Fruit mass of an individual plant of circumference class | |
| g m | tmp_biomass | Fruit mass of the PFT | |
| g plant | circ_class_biomass | Above-ground stem mass of an individual plant of circumference class | |
| g plant | circ_class_biomass | Below-ground woody mass, i.e., the coarse roots, of an individual plant of circumference class | |
| g plant | circ_class_biomass | Above=ground stem mass of an individual tree in circumference class | |
| g plant | circ_class_biomass | total biomass of an individual plant of circumference class | |
| g plant | bm_sapl | total biomass of an individual recruit | |
| g C plant | circ_class_biomass | Labile carbon pool of circumference class | |
| g C m | tmp_biomass | Labile carbon pool of the PFT | |
| g N plant | circ_class_biomass | Labile nitrogen pool of circumference class | |
| g N m | tmp_biomass | Labile nitrogen pool of the PFT | |
| g C plant | circ_class_biomass | Reserve carbon pool of circumference class | |
| g C m | tmp_biomass | Reserve carbon pool of the PFT | |
| g N m | tmp_biomass | Reserve nitrogen pool of the PFT | |
| g C plant | Cl_inc | Increment in leaf mass of an individual plant | |
| g C plant | Cs_inc | Increment in sapwood mass of an individual plant | |
| g C plant | Cr_inc | Increment in root mass of an individual plant | |
| g C plant | Cf_inc | Increment in fruit mass of an individual plant | |
| g C plant | b_inc | Increment in plant biomass of an individual plant | |
| g C m | b_inc_tot | Total biomass increment for the PFT | |
| g m | d_mortality | Targeted mortality |
1.7Table: vegetation potentials and resistances¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
1.8Table: harvest and product pools¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| g m | harvest_pool | Biomass harvest of croplands | |
| g m | harvest_pool | Biomass harvest of grasslands | |
| g m | harvest_pool | Biomass harvest of forests | |
| g m | harvest_pool | Harvested biomass of trees with a diameter less than 0.2 m | |
| g m | harvest_pool | Harvested biomass of trees with a diameter exceeding 0.2 m | |
| g grid cell | prod_s | Mass of the short-lived product pool | |
| g grid cell | prod_n | Mass of the medium-lived product pool | |
| g grid cell | prod_l | Mass of the long-lived product pool |
1.9Table: modulators¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| - | control_moist | Rate modifier accounting for the effect of soil moisture on decomposition | |
| - | control_temp | Rate modifier accounting for the effect of soil temperature on decomposition | |
| - | - | Rate modifier accounting for the effect of the lignin content of the litter pool on decomposition | |
| - | gtemp | Temperature modulator for maintenance respiration for plant organ | |
| - | adjust_resp | Nitrogen modulator for maintenance respiration for plant organ | |
| - | wstress_fac | Modulator for water stress as experienced by the plants | |
| - | Ct_j | Modulator that accounts for the climate conditions compared to the reference conditions | |
| - | Eff_age_VOC | Modulator that accounts for the leaf age on bvoc production |
1.10Table: fractions¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| - | litterfrac() | Fraction of the input biomass of organ that goes into the metabolic pool | |
| g C.g N | CN | Carbon-to-nitrogen ratio of the organ of the input biomass | |
| - | frac_soil | Fractions of the decayed litter going to the soil | |
| - | tree_ff | Form factor () to account for the fact that tree trunks are conical rather than cylindrical | |
| - | root_profile | Functional vertical root profile given as share of the root mass in soil layer | |
| - | root_profile | Structural vertical root profile given as share of the root mass in soil layer | |
| - | update_sugar_load | Proxy for sugar loading of the sap flow | |
| - | f_alloc | Fractions of the available carbon to be allocated to the leaves | |
| - | f_alloc | Fractions of the available carbon to be allocated to the sapwood | |
| - | f_alloc | Fractions of the available carbon to be allocated to the roots | |
| - | f_alloc | Fractions of the available carbon to be allocated to the fruits | |
| g N g N | fcost | the total nitrogen mass required to allocate 1 g of N to the leaves | |
| - | Pwc_h | Porosity of a tree crown | |
| - | PgapL | Gap probability for canopy | |
| - | PgapL | Gap probability for canopy | |
| - | PgapL | Gap probability for grasses and crops | |
| - | PgapL | Gap probability for bare soil | |
| m | KF | Leaf allocation factor | |
| - | LF | Root allocation factor | |
| - | s | Slope of linearised relationship between height and basal area | |
| - | leaf_frac | Fraction of leaf biomass in leaf age class | |
| - | rdi | Actual relative density index | |
| - | potential_rdi | Potential relative density index | |
| - | rdi_target_lower | Lower boundary of the target relative density index | |
| - | rdi_target_upper | Upper boundary of the target relative density index | |
| - | st_dist | Relative share of mortality in each age class | |
| - | CDF | Relative share of circumference class in the total stand density | |
| - | contfrac | Continental fraction of a grid cell | |
| - | veget_max | Fraction of a specific PFT in a grid cell | |
| - | loss_gain | Change in the fraction of a specific PFT in a grid cell | |
| - | no_bio | Fraction of glaciers in a grid cell |
1.11Table: bark¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| - | tmp_legacy | Indicator of bark beetle breeding of the current year | |
| ° C day | sumTeff | Sum of effective temperature for bark beetle reproduction | |
| ° C day | beetle_generation_b | Thermal sum of degree days for one bark beetle generation | |
| ° C | opt_temp_beetle | Optimal bark temperature for beetle development | |
| ° C | min_temp_beetle | Bark temperature below which beetle development stops | |
| ° C | tbark_daily | Average daily bark temperature | |
| - | i_beetles_pressure | Indicator of bark beetle pressure | |
| - | i_beetles_survival_gp | Indicator for increased bark beetle survival which could result from favorable conditions for beetle demography | |
| - | i_beetles_activity_legacy | Indicator of the loss of tree biomass in the previous year due to bark beetle infestation | |
| g m | B_beetles_kill_legacy | Biomass killed by bark beetles during previous year | |
| g m | circ_class_biomass | Total biomass of the stand | |
| - | i_hosts_dead_gp | Species group-level susceptibility of bark beetle survival due to the leftover of windthrow debris | |
| - | i_hosts_alive_gp | Species group-level susceptibility of beetle survival to host availability due to the stand age | |
| g m | N_wood | Quantity of woody necromass from the current year | |
| g m | B_wood | Total living woody biomass in the stand | |
| - | i_beetles_massattack_gp | Indicator of the ability of bark beetles to attack healthy trees when the number of bark beetles is large enough | |
| - | i_hosts_susceptibility_gp | Indicator for host suitability | |
| - | rdi_gp | Relative density index | |
| - | ind | Current tree density of an age class a | |
| - | Nmax() | Maximum stand density of a stand given its diameter | |
| - | veget_max | Fraction of spruce in the grid cell that resides in this age class | |
| - | veget_max_gp | Fraction of spruce within a grid cell | |
| - | i_hosts_attractivity_gp | Indicator the suitability of a stand for the establishment of a new bark beetle colony | |
| - | i_hosts_competition_gp | Indicator of the trees’s stress experience due to within-stand resource competition | |
| - | i_hosts_defence_gp | Indicator of the ability of the host to set up a defense against a bark beetle attack | |
| - | i_hosts_share_gp | Indicator of spruce abundance | |
| - | season_drought_legacy | Maximum water stress in the previous 3 years | |
| - | share | Index of the purity of the stand (monospecific vs mixed) | |
| - | vegetmax_deciduous | Fraction of deciduous PFTs (currently PFT 6 and 8) | |
| - | vegetmax_coniferous | Fraction of coniferous PFTs (currently PFT 4 and 7) | |
| g m | B_beetles_kill | Biomass of trees killed by bark beetles in one year and one grid cell | |
| - | P_success | Probability of a successful attack averaged over the number of spruce age classes l | |
| g m | B_beetles_attacked_gp | Biomass of trees attacked by bark beetles | |
| g m | B_total | Actual stand biomass of spruce | |
| - | P_beetles_attacked_gp | Ability of the bark beetles to spread and locate new suitable spruce trees as hosts for breeding | |
| - | P_success | Probability of success of a bark beetles attack | |
| - | i_hosts_health | Indicator of tree health for each age class |
1.12Table: calculated parameters¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| - | k_latosa | Leaf area to sapwood area of an individual tree | |
| m g C | sla | Specific leaf area | |
| m | sigmas | Cut-off circumference of the intra-specific competition, calculated as a function of the distribution of the circumference classes. | |
| m | gamma | Slope of the intra-specific competition | |
| m | pipe_tune2 | The tree height for a tree diameter of 1-meter | |
| - | alpha_self_thinning | Intercept of the self-thinning relationship | |
| - | k | Shape parameter of the Weibull distribution |
1.13Table: other¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| - | different indices | Indicates a specific vertical layer. E.g., an atmospheric, soil, or canopy layer | |
| - | different indices | Indicates a specific biomass component. E.g., leaves, roots, fruits,... | |
| - | different BVOC compounds | ||
| - | icir | Circumference class | |
| - | nvm | Number of PFTs | |
| - | ncirc | Number of circumference classes | |
| - | nslm | Number of soil layers | |
| - | nparts | Number of plant organs | |
| - | nlevels_loc | Number of canopy layers to calculate gap fraction and light penetration | |
| - | nagec | Number of age classes within a vegetation MTC | |
| - | nleafages | Number of leaf age classes | |
| - | nshort | Number of age classes in the short-lived product pool | |
| - | nmedium | Number of age classes in the medium-lived product pool | |
| - | nlong | Number of age classes in the long-lived product pool | |
| - | d | Number of degrees of a polynomial function | |
| z | m | z_array | Height above the soil |
| m | z_array | Height above the soil of level | |
| m | upper | Top of the canopy at the stand level | |
| m | lower | Top of the canopy at the stand level | |
| radians | solar_angle | Solar zenith angle | |
| days | leaf_classes | width in of an individual leaf age class | |
| days | leaf_age | age of the leaf mass in age class | |
| days | leaf_meanage | the mean leaf age | |
| K | leaf_age_crit | Location specific leaf age threshold for determining leaf senescence | |
| K | t_crit | Critical temperature for leaf senescence | |
| s | herbivores | time constant of the probability of a leaf to be eaten by a herbivore | |
| days | ngd_minus5 | The number of days with a temperature above 268.15K since midwinter (shortest day of the year) | |
| K | gdd_midwinter | The growing degree days since midwinter (shortest day of the year) | |
| K or ° C | gdd_min, gdd_crit | Temperature threshold used to determine leaf onset timing for phenology modules | |
| days | ncd_dormance | The number of days with a temperature above a PFT specific temperature since since midwinter (shortest day of the year) | |
| - | vegstress_day | If hydraulic architecture is used, this is a ratio between a proxy for stressed and unstressed ecosystem functioning (i.e. daytime photosynthesis). If hydraulic architecture is not used this is soil moisture availability | |
| - | vegstress_week | mean vegetation stress () averaged over the past week | |
| - | vegstress_month | mean vegetation stress () averaged over the past month | |
| - | vegstress_crit | critical moisture availability (0 - 1) | |
| - | minvegstress_lastyear | last year’s minimum moisture availability (0 - 1) | |
| - | maxvegstress_lastyear | last year’s maximum moisture availability (0 - 1) | |
| days | harvest_time | Harvest time as a function of the long-term temperature | |
| K | when_growthinit | Growing degree days since the start of the growing season | |
| m | area_timber_removals_5_years | Surface area that was thinned or harvested in the past 5 years | |
| m | area_around_gap | Surface area within 9 tree heights from a gap | |
| m | area_total_further | Surface area at least 9 tree heights away from a gap | |
| m | area | Surface area of a grid cell |
1.14Table: fire¶
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| ℃2 | ni_acc | Nesterov index | |
| - | dfm | Daily fuel moisture | |
| - | me_grid | Moisture of extinction for the whole grid | |
| - | fdi | Daily fire danger index, climatic fire risk | |
| - | Weighting factors to derive an overall drying speed of fuel bed | ||
| gC m-2 | litterfuel_class_grid | Grid cell value of aboveground litter fuel of different fuel classes over burnable ground area | |
| lightn_ign | Lightning ignitions | ||
| human_ign | Human ignitions | ||
| - | lightning_cg_ratio | Fraction of cloud-to-ground lightning in total lightning | |
| - | human_suppression | Human suppression effects on lightning ignitions (0–1) | |
| - | lightn_efficiency | Fractions of lightnings that reach ground with sufficient energy to ignite | |
| popd | Human population density | ||
| ignitions individual-1 day-1 | a_nd | Parameter for potential human-caused ignitions | |
| - | ignition_efficiency | Ignition efficiency as a function of fuel load, (0-1) | |
| gC m-2 | fuel_low_bound | Lower bound of total fuel load below which ignition efficiency is 0 | |
| gC m-2 | fuel_high_bound | Upper bound of total fuel load above which ignition efficiency is 1 |
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| ha | area_burnable_veg | Land area covered with burnable vegetation within a grid cell | |
| - | numfire | Number of fires | |
| min | fire_durat | Fire duration | |
| ros_f | Forward fire spread rate | ||
| ir | Reaction intensity (energy release rate per unit area of fire front) | ||
| - | xi | Propagating flux ratio (It measures the proportion of energy released during fuel combustion used to heat adjacent fuel) | |
| - | phi_wind | A multiplier that accounts for the effect of wind in increasing the effectiveness of propagating flux heating | |
| bulkdensity_grid | Fuel bulk density weighted by mass of dead fine fuel and live grass | ||
| - | eps | Effective heating number (the proportion of a fuel particle that is heated to ignition temperature at the time flaming combustion starts) | |
| q_ig | Heat of pre-ignition (the amount of heat required to ignite a given fuel mass) | ||
| ros_b | Backward fire spread rate | ||
| m | db | Diameter at the backward direction for the fire ellipse | |
| m | df | Diameter at the forward direction for the fire ellipse | |
| wind_speed | Wind speed adjusted by fractions of herbaceous and tree covers |
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| - | fpc_grass_total | Total grass fraction (including burnable herbaceous PFTs) | |
| - | fpc_tree_total | Total tree fraction | |
| - | lb | Length-to-breadth ratio of the fire ellipse | |
| ha | mean_fire_size | Mean fire size | |
| ha | area_burnt | Daily burned area | |
| emissions_fire | Emissions from fire | ||
| - | cf_1hr, cf_10hr, cf_100hr, cf_1000hr | Combustion fraction for different class fuel | |
| - | dfm_livegrass | Daily live grass fuel moisture | |
| emissions_trace_gas | Trace gas emissions | ||
| g (kg dry mass) | ef_trace | Emission factor for trace gases | |
| dcflux_fire_pft | Fire carbon flux to atmosphere, including both crown emissions and litter consumption emissions | ||
| frontline_intensity | Surface fire frontline intensity | ||
| g(dry mass) m | Fine fuel consumption | ||
| m | scorching_height | Fire flame scorching height | |
| - | f_sh | Scorch height parameter for crown fire | |
| kJ kg | H | Heat content of the fuel | |
| - | fire_frac | Fraction of area burned against burnable ground area only | |
| - | ck | Proportion of crown scorched by fire | |
| m | canopy_height | Tree height | |
| m | crown_length | Crown length (crown vertical diameter) | |
| - | pm_ck | Tree mortality due to crown damage |
Continuation of Table 3
| Symbol in text | Unit | Symbol in ORCHIDEE v4.2 | Description |
| - | r_ck | Parameter for postfire mortality as a result of crown damage | |
| - | p_ck | Parameter for postfire mortality as a result of crown damage | |
| min | tau_l | Residence time of fire | |
| var_gamma | Reaction velocity | ||
| - | cf_finefuel | Combustion fraction for surface fine litter fuel, including 1hr/10hr/100hr fuel | |
| min | tau_c | Critical time for cambial damage | |
| cm | bark_thickness | Bark thickness | |
| - | BTpar1 | Bark thickness parameter | |
| - | BTpar2 | Bark thickness parameter | |
| m | diameter | Diameter at breast height for representative tree | |
| - | pm_tau | Tree mortality due to cambial damage | |
| - | pm_ck | Tree mortality due to crown damage | |
| - | postf_mort | Fire-caused forest mortality | |
| circ_class_kill | Number of trees within a circumference class that need to be killed | ||
| circ_class_n | Number of individuals in each circumference class |